Dudgeon, C.L. & Corrigan, S. & Yang, L. & Allen, G.R. & Erdmann, M.V. & Fahmi & Sugeha, H.Y. & White, W.T. & Naylor, G.J.P. (2020)
Walking, swimming or hitching a ride? Phylogenetics and biogeography of the walking shark genus Hemiscyllium. Marine and Freshwater Research, 71(9), 1107–1117
DOI: 10.1071/MF19163

Fricke, R. & Allen, G.R. & Amon, D. & Andrefouet, S. & Chen, W.J. & Kinch, J. & Mana, R. & Russell, B.C. & Tully, D. & White, W.T. (2019)
Checklist of the marine and estuarine fishes of New Ireland Province, Papua New Guinea, western Pacific Ocean, with 810 new records. Zootaxa, 4588(1), 1–360
DOI: 10.11646/zootaxa.4588.1.1

Allen, G.R. & Erdmann, M.V. & White, W.T. & Fahmi & Dudgeon, C.L. (2016)
Review of the bamboo shark genus Hemiscyllium (Orectolobiformes: Hemiscyllidae). Journal of the Ocean Science Foundation, 23, 51–97

Fricke, R. & Allen, G.R. & Andréfouët, S. & Chen, W.-J. & Hamel, M.A. & Laboute, P. & Mana, R. & Hui, T.H. & Uyeno, D. (2014)
Checklist of the marine and estuarine fishes of Madang District, Papua New Guinea, western Pacific Ocean, with 820 new records. Zootaxa, 3832(1), 1–247
DOI: 10.11646/zootaxa.3832.1.1

Hobbs, J.-P.A. & Newman, S.J. & Mitsopoulos, G.E.A. & Travers, M.J. & Skepper, C.L. & Gilligan, J.J. & Allen, G.R. & Choat, H.J. & Ayling, A.M. (2014)
Fishes of the Cocos (Keeling) Islands: new records, community composition and biogeographic significance. Raffles Bulletin of Zoology, 203–219

Allen, G.R. & Erdmann, M.V. & Dudgeon, C.L. (2013)
Hemiscyllium halmahera, a new species of Bamboo Shark (Hemiscylliidae) from Indonesia. Aqua, International Journal of Ichthyology, 19(3), 123–136

Allen, G.R. & Erdmann, M.V. (2012)
Reef fishes of the East Indies. Volumes I-III. Tropical Reef Research, Perth Australia. [v. I: x + 1-424 + end note; v. II: 425-855; v. III: preface, map, contents and 857-1260; including Appendix 1(new species descriptions) and Appendix II(addendum), Copies were distributed in March 2012.]

Allen, G.R. & Bailey, S. (2011)
Reef Fishes of the Phoenix Islands, Central Pacific Ocean. Atoll Research Bulletin, 589, 83–118

Allen, G.R. & Dudgeon, C.L. (2010)
Hemiscyllium michaeli, a new species of bamboo shark (Hemiscyllidae) from Papua New Guinea. Aqua, International Journal of Ichthyology, 16(1), 19–30

Allen, G.R. & Erdmann, M.V. (2008)
Two new species of bamboo sharks (Orectolobiformes: Hemiscylliidae) from Western New Guinea. Aqua, International Journal of Ichthyology, 13(3–4), 93–108

Allen, G.R. (2004)
Handy pocket guide to tropical coral reef fishes. Periplus Editions(HK) Ltd. 64 p.

Allen, G.R. & Adrim, M. (2003)
Coral reef fishes of Indonesia. Zoological Studies, 42(1), 1–72

Allen, G.R. (1997)
Marine fishes of tropical Australia and south-east Asia. Western Australian Museum, Perth. 1-292

Randall, J.E. & Allen, G.R. & Steene, R.C. (1997)
Fishes of the Great Barrier Reef and Coral Sea. 2nd, revised ed., Crawford House Press, Bathurst NSW. i-xx + 1-557, Pls. 1-7

Allen, G.R. & Cowan, M.A. (1995)
First record of the false catshark, Pseudotriakis microdon, from Australian seas. Records of the Western Australian Museum, 17, 235–236

Allen, G.R. & Robertson, D.R. (1994)
Fishes of the tropical eastern Pacific. Colorcraft, Ltd.: Hong Kong. 332 p.

Masuda, H. & Allen, G.R. (1993)
Meeresfische der Welt - Groß-Indopazifische Region. Tetra Verlag, Herrenteich, Melle. 528 p.

Randall, J.E. & Allen, G.R. & Steene, R.C. (1990)
Fishes of the Great Barrier Reef and Coral Sea. University of Hawaii Press, Honolulu, Hawaii. 506 p.

Paxton, J.R. & Hoese, D.S.F. & Allen, G.R. & Handley, J.E. (1989)
Zoological Catalogue of Australia. Vol. 7. Pisces. Petromyzontidae to Carangidae. Australian Biol. Res. Study, Australian Gov. Publ. Serv., Canberra, i–xii, 1–665

Allen, G.R. & Steene, R.C. (1988)
Fishes of Christmas Island Indian Ocean. Christmas Island Natural History Association, Christmas Island, Indian Ocean, 6798, Australia. 197 p.

Allen, G.R. & Swainston, R. (1988)
The marine fishes of north-western Australia. A field guide for anglers and divers. Western Australian Museum, Perth. i-vi + 1-201, Pls. 1-70. [Revised ed. 1990, 2nd rev. ed. 1993, repinted 1994, 1995.]

Allen, G.R. & Hoese, D.F. & Paxton, J.R. & Randall, J.E. & Russell, B.C. & Starck, W.A. & Talbot, F.H. & Whitley, G.P. (1976)
Annotated checklist of the fishes of Lord Howe Island. Records of the Australian Museum, 30(15), 365–454
DOI: 10.3853/j.0067-1975.30.1976.287