Rozanski, R. & Velez, L. & Hocdé, R. & Duhamet, A. & Waldock, C. & Mouillot, D. & Pellissier, L. & Albouy, C. (2024)
Seasonal dynamics of Mediterranean fish communities revealed by eDNA: Contrasting compositions across depths and Marine Fully Protected Area boundaries. Ecological Indicators, 166, Article 112290
DOI: 10.1016/j.ecolind.2024.112290

Duhamet, A. & Albouy, C. & Marques, V. & Manel, S. & Mouillot, D. (2023)
The global depth range of marine fishes and their genetic coverage for environmental DNA metabarcoding. Ecology and Evolution, 13(1), Article e9672
DOI: 10.1002/ece3.9672

Heudier, M. & Mouillot, D. & Mannocci, L. (2023)
Assessing the effects of coral reef habitat and marine protected areas on threatened megafauna using aerial surveys. Aquatic Conservation, Marine and Freshwater Ecosystems, 33(3), 286–297
DOI: 10.1002/aqc.3923

Faure, N. & Manel, S. & Mace, B. & Arnal, V. & Guellati, N. & Holon, F. & Barroil, A. & Pichot, F. & Riutort, J.J. & Insacco, G. & Zava, B. & Mouillot, D. & Deter, J. (2023)
An environmental DNA assay for the detection of Critically Endangered angel sharks (Squatina spp.). Aquatic Conservation, Marine and Freshwater Ecosystems, 33(10), 1088–1097
DOI: 10.1002/aqc.3954

Murray, S. & Meeuwig, J.J. & Thompson, C.D.H. & Mouillot, D. (2023)
Identifying the drivers of silky shark distribution and an evaluation of protection measures. Environmental Biology of Fishes, 106, 1693–1713
DOI: 10.1007/s10641-023-01437-7

Pimiento, C. & Albouy, C. & Silvestro, D. & Mouton, T.L. & Velez, L. & Mouillot, D. & Judah, A.B. & Griffin, J.N. & Leprieur, F. (2023)
Functional diversity of sharks and rays is highly vulnerable and supported by unique species and locations worldwide. Nature Communications, 14(1), Article 7691
DOI: 10.1038/s41467-023-43212-3

Steinberg, M. & Juhel, J.B. & Marques, V. & Peron, C. & Hocde, R. & Fernandez, A.P. & Pellissier, L. & Villeger, S. & Mouillot, D. & Letessier, T.B. (2022)
Similar trait structure and vulnerability in pelagic fish faunas on two remote island systems. Marine Biology, 169(1), Article 15
DOI: 10.1007/s00227-021-03998-6

Walsh, C.A.J. & Momigliano, P. & Boussarie, G. & Robbins, W.D. & Bonnin, L. & Fauvelot, C. & Kiszka, J.J. & Mouillot, D. & Vigliola, L. & Manel, S. (2022)
Genomic insights into the historical and contemporary demographics of the grey reef shark. Heredity, 128(4), 225–235
DOI: 10.1038/s41437-022-00514-4

Boussarie, G. & Momigliano, P. & Robbins, W.D. & Bonnin, L. & Cornu, J.F. & Fauvelot, C. & Kiszka, J.J. & Manel, S. & Mouillot, D. & Vigliola, L. (2022)
Identifying barriers to gene flow and hierarchical conservation units from seascape genomics: a modelling framework applied to a marine predator. Ecography, 7, Article e06158
DOI: 10.1111/ecog.06158

Desgarnier, L. & Mouillot, D. & Vigliola, L. & Chaumont, M. & Mannocci, L. (2022)
Putting eagle rays on the map by coupling aerial video-surveys and deep learning. Biological Conservation, 267, Article 109494
DOI: 10.1016/j.biocon.2022.109494

Dalongeville, A. & Boulanger, E. & Marques, V. & Charbonnel, E. & Hartmann, V. & Santoni, M.C. & Deter, J. & Valentini, A. & Lenfant, P. & Boissery, P. & Dejean, T. & Velez, L. & Pichot, F. & Sanchez, L. & Arnal, V. & Bockel, T. & Delaruelle, G. & Holon, F. & Milhau, T. & Romant, L. & Manel, S. & Mouillot, D. (2022)
Benchmarking eleven biodiversity indicators based on environmental DNA surveys: More diverse functional traits and evolutionary lineages inside marine reserves. Journal of Applied Ecology, 59(11), 2803–2813
DOI: 10.1111/1365-2664.14276

Murgier, J. & Mclean, M. & Maire, A. & Mouillot, D. & Loiseau, N. & Munoz, F. & Violle, C. & Auber, A. (2021)
Rebound in functional distinctiveness following warming and reduced fishing in the North Sea. Proceedings of the Royal Society of London, Series B, 288(1942), Article 20201600
DOI: 10.1098/rspb.2020.1600

Bonnin, L. & Mouillot, D. & Boussarie, G. & Robbins, W.D. & Kiszka, J.J. & Dagorn, L. & Vigliola, L. (2021)
Recent expansion of marine protected areas matches with home range of grey reef sharks. Scientific Reports, 11, Article 14221
DOI: 10.1038/s41598-021-93426-y

Juhel, J.B. & Vigliola, L. & Wantiez, L. & Letessier, T.B. & Meeuwig, J.J. & Mouillot, D. (2019)
Isolation and no-entry marine reserves mitigate anthropogenic impacts on grey reef shark behavior. Scientific Reports, 9, Article 2897
DOI: 10.1038/s41598-018-37145-x

Letessier, T.B. & Mouillot, D. & Bouchet, P.J. & Vigliola, L. & Fernandes, M.C. & Thompson, C. & Boussarie, G. & Turner, J. & Juhel, J.B. & Maire, E. & Caley, M.J. & Koldewey, H.J. & Friedlander, A. & Sa-La, E. & Meeuwig, J.J. (2019)
Remote reefs and seamounts are the last refuges for marine predators across the Indo-Pacific. PLoS Biology, 17(8), Article e3000366
DOI: 10.1371/journal.pbio.3000366

Bonnin, L. & Robbins, W.D. & Boussarie, G. & Kiszka, J.J. & Dagorn, L. & Mouillot, D. & Vigliola, L. (2019)
Repeated long-range migrations of adult males in a common Indo-Pacific reef shark. Coral Reefs, 38(6), 1121–1132
DOI: 10.1007/s00338-019-01858-w

Juhel, J.-B. & Vigliola, L. & Mouillot, D. & Kulbicki, M. & Letessier, T.B. & Meeuwig, J.J. & Wantiez, L. (2018)
Reef accessibility impairs the protection of sharks. Journal of Applied Ecology, 55(2), 673–683
DOI: 10.1111/1365-2664.13007

Boussarie, G. & Bakker, J. & Wangensteen, O.S. & Mariani, S. & Bonnin, L. & Juhel, J.-B. & Kiszka, J.J. & Kulbicki, M. & Manel, S. & Robbins, W.D. & Vigliola, L. & Mouillot, D. (2018)
Environmental DNA illuminates the dark diversity of sharks. Science Advances, 4(5), Article eaap9661
DOI: 10.1126/sciadv.aap9661

Bakker, J. & Wangensteen, O.S. & Chapman, D.D. & Boussarie, G. & Buddo, D. & Guttridge, T.L. & Hertler, H. & Mouillot, D. & Vigliola, L. & Mariani, S. (2017)
Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact. Scientific Reports, 7, Article 16886
DOI: 10.1038/s41598-017-17150-2

Juhel, J.B. & Wantiez, L. & Mouillot, D. & Mailau, S. & Vigliola, L. (2015)
Occurrence of sub-adult tiger sharks (Galeocerdo cuvier) in a small and very remote atoll lagoon. Marine Biodiversity, 45(2), 151–152
DOI: 10.1007/s12526-014-0246-z

Poulin, R. & Guilhaumon, F. & Randhawa, H.S. & Luque, J.L. & Mouillot, D. (2011)
Identifying hotspots of parasite diversity from species-area relationships: host phylogeny versus host ecology. Oikos, 120, 740–747
DOI: 10.1111/j.1600-0706.2010.19036.x

Sosa-López, A. & Mouillot, D. & Chi, T.D. & Ramos-Miranda, J. (2005)
Ecological indicators based on fish biomass distribution along trophic levels: an application to the Terminos coastal lagoon, Mexico. ICES Journal of Marine Science, 62(3), 453–458
DOI: 10.1016/j.icesjms.2004.12.004