Manuzzi, A. & Jimenez-Mena, B. & Henriques, R. & Holmes, B.J. & Pepperell, J. & Edson, J. & Bennett, M.B. & Huveneers, C. & Ovenden, J.R. & Nielsen, E.E. (2022)
Retrospective genomics highlights changes in genetic composition of tiger sharks (Galeocerdo cuvier) and potential loss of a south-eastern Australia population. Scientific Reports, 12, Article 6582
DOI: 10.1038/s41598-022-10529-w

Green, M.E. & Appleyard, S.A. & White, W.T. & Tracey, S.R. & Heupel, M.R. & Ovenden, J.R. (2022)
Updated connectivity assessment for the scalloped hammerhead (Sphyrna lewini) in Pacific and Indian Oceans using a multi-marker genetic approach. Fisheries Research, 251, Article 106305
DOI: 10.1016/j.fishres.2022.106305

Sort, M. & Manuzzi, A. & Jimenez-Mena, B. & Ovenden, J.R. & Holmes, B.J. & Bernard, A.M. & Shivji, M.S. & Meldrup, D. & Bennett, M.B. & Nielsen, E.E. (2021)
Come together: calibration of tiger shark (Galeocerdo cuvier) microsatellite databases for investigating global population structure and assignment of historical specimens. Conservation Genetics Resources, 13, 209–220
DOI: 10.1007/s12686-021-01197-5

Lopes da Silva Ferrette, B. & Coelho, R. & Peddemors, V.M. & Ovenden, J.R. & de Franco, B.A. & Oliveira, C. & Foresti, F. & Mendonça, F.F. (2021)
Global phylogeography of the smooth hammerhead shark: Glacial refugia and historical migration patterns. Aquatic Conservation, Marine and Freshwater Ecosystems, 31(9), 2348–2368
DOI: 10.1002/aqc.3629

Green, M.E. & Appleyard, S.A. & White, W. & Tracey, S. & Devloo-Delva, F. & Ovenden, J.R. (2019)
Novel multimarker comparisons address the genetic population structure of silvertip sharks (Carcharhinus albimarginatus). Marine and Freshwater Research, 70(7), 1007–1019
DOI: 10.1071/MF18296

Holmes, B.J. & Pope, L.C. & Williams, S.M. & Tibbetts, I.R. & Bennett, M.B. & Ovenden, J.R. (2018)
Lack of multiple paternity in the oceanodromous tiger shark (Galeocerdo cuvier). Royal Society Open Science, 5(1), Article 171385
DOI: 10.1098/rsos.171385

Weltz, K. & Lyle, J.M. & Semmens, J.M. & Ovenden, J.R. (2018)
Population genetics of the endangered Maugean skate (Zearaja maugeana) in Macquarie Harbour, Tasmania. Conservation Genetics, 19(6), 1505–1512
DOI: 10.1007/s10592-018-1117-0

Nielsen, E.E. & Morgan, J.A.T. & Maher, S.L. & Edson, J. & Gauthier, M. & Pepperell, J. & Holmes, B.J. & Bennett, M.B. & Ovenden, J.R. (2017)
Extracting DNA from “JAWS”; High yield and quality from archived tiger shark (Galeocerdo cuvier) skeletal material. Molecular Ecology Resources, 17(3), 431–442
DOI: 10.1111/1755-0998.12580

Johnson, G.J. & Buckworth, R.C. & Lee, H. & Morgan, J.A. & Ovenden, J.R. & Mcmahon, C.R. (2017)
A novel field method to distinguish between cryptic carcharhinid sharks, Australian blacktip shark Carcharhinus tilstoni and common blacktip shark C. limbatus, despite the presence of hybrids. Journal of Fish Biology, 90(1), 39–60
DOI: 10.1111/jfb.13102

Dudgeon, C.L. & Coulton, L. & Bone, R. & Ovenden, J.R. & Thomas, S. (2017)
Switch from sexual to parthenogenetic reproduction in a zebra shark. Scientific Reports, 7, Article 40537

Vargas-Caro, C. & Bustamante, C. & Bennett, M.B. & Ovenden, J.R. (2017)
Towards sustainable fishery management for skates in South America: The genetic population structure of Zearaja chilensis and Dipturus trachyderma (Chondrichthyes, Rajiformes) in the south-east Pacific Ocean. PLoS ONE, 12(2), Article e0172255
DOI: 10.1371/journal.pone.0172255

Holmes, B.J. & Williams, S.M. & Otway, N.M. & Nielsen, E.E. & Maher, S.L. & Bennett, M.B. & Ovenden, J.R. (2017)
Population structure and connectivity of tiger sharks (Galeocerdo cuvier) across the Indo-Pacific Ocean basin. Royal Society Open Science, 4, Article 170309
DOI: 10.1098/rsos.170309

Vargas-Caro, C. & Bustamante, C. & Lamilla, J. & Bennett, Mb. & Ovenden, J.R. (2016)
The phylogenetic position of the roughskin skate Dipturus trachyderma (Krefft & Stehmann, 1975) (Rajiformes, Rajidae) inferred from the mitochondrial genome. Mitochondrial DNA, 27(4), 2965–2966
DOI: 10.3109/19401736.2015.1060462

Vargas-Caro, C. & Bustamante, C. & Bennett, M.B. & Ovenden, J.R. (2016)
The complete validated mitochondrial genome of the yellownose skate Zearaja chilensis (Guichenot 1848) (Rajiformes, Rajidae). Mitochondrial DNA, 27(2), 1227–1228
DOI: 10.3109/19401736.2014.945530

Blower, D.C. & Ovenden, J.R. (2016)
The complete mitochondrial genome of the sandbar shark Carcharhinus plumbeus. Mitochondrial DNA, 27(2), 923–924
DOI: 10.3109/19401736.2014.926487

Bustamante, C. & Barría, C. & Vargas-Caro, C. & Ovenden, J.R. & Bennett, M.B. (2016)
The phylogenetic position of the giant devil ray Mobula mobular (Bonnaterre, 1788) (Myliobatiformes, Myliobatidae) inferred from the mitochondrial genome. Mitochondrial DNA, 27(5), 3540–3541
DOI: 10.3109/19401736.2015.1074208

Bowden, D.L. & Vargas-Caro, C. & Ovenden, J.R. & Bennett, M.B. & Bustamante, C. (2016)
The phylogenomic position of the grey nurse shark Carcharias taurus Rafinesque, 1810 (Lamniformes, Odontaspididae) inferred from the mitochondrial genome. Mitochondrial DNA, 27(6), 4328–4330
DOI: 10.3109/19401736.2015.1089486

Bustamante, C. & Bennett, M.B. & Ovenden, J.R. (2016)
Genetype and phylogenomic position of the frilled shark Chlamydoselachus anguineus inferred from the mitochondrial genome. Mitochondrial DNA Part B, 1(1), 18–20
DOI: 10.1080/23802359.2015.1137801

Giles, J.L. & Riginos, C. & Naylor, G.J.P. & Dharmadi & Ovenden, J.R. (2016)
Genetic and phenotypic diversity in the wedgefish Rhynchobatus australiae, a threatened ray of high value in the shark fin trade. Marine Ecology Progress Series, 548, 165–180
DOI: 10.3354/meps11617

Dudgeon, C.L. & Ovenden, J.R. (2015)
The relationship between abundance and genetic effective population size in elasmobranchs: an example from the globally threatened zebra shark Stegostoma fasciatum within its protected range. Conservation Genetics, 16(6), 1443–1454
DOI: 10.1007/s10592-015-0752-y

Blower, D.C. & Corley, S. & Hereward, J.P. & Riginos, C.R. & Ovenden, J.R. (2015)
Characterisation and cross-amplification of 19 novel microsatellite loci for the sandbar shark, Carcharhinus plumbeus. Conservation Genetics Resources, 7(4), 913–915
DOI: 10.1007/s12686-015-0500-0

Blower, D.C. & Corley, S. & Hereward, J.P. & Riginos, C.R. & Ovenden, J.R. (2015)
Characterisation and cross-amplification of 21 novel microsatellite loci for the dusky shark, Carcharhinus obscurus. Conservation Genetics Resources, 7(4), 909–912
DOI: 10.1007/s12686-015-0499-2

Geraghty, P.T. & Williamson, J.E. & Macbeth, W.G. & Wintner, S.P. & Harry, A.V. & Ovenden, J.R. & Gillings, M.R. (2014)
Correction: Population Expansion and Genetic Structure in Carcharhinus brevipinna in the Southern Indo- Pacific. PLoS ONE, 9(4), Article e94738
DOI: 10.1371/journal.pone.0094738

Giles, J.L. & Ovenden, J.R. & Dharmadi & Almojil, D. & Garvilles, E. & Khampetch, K. & Manjebrayakath, H. & Riginos, C. (2014)
Extensive genetic population structure in the Indo–West Pacific spot-tail shark, Carcharhinus sorrah. Bulletin of Marine Science, 90(1), 427–454
DOI: 10.5343/bms.2013.1009

Geraghty, P.T. & Williamson, J.E. & Macbeth, W.G. & Blower, D.C. & Morgan, J.A.T. & Johnson, G. & Ovenden, J.R. & Gillings, M.R. (2014)
Genetic structure and diversity of two highly vulnerable carcharhinids in Australian waters. Endangered Species Research, 24(1), 45–60
DOI: 10.3354/esr00580

Blower, D.C. & Hereward, J.P. & Ovenden, J.R. (2013)
The complete mitochondrial genome of the dusky shark Carcharhinus obscurus. Mitochondrial DNA, 24(6), 619–621
DOI: 10.3109/19401736.2013.772154

Geraghty, P.T. & Williamson, J.E. & Macbeth, W.G. & Wintner, S.P. & Harry, A.V. & Ovenden, J.R. & Gillings, M.R. (2013)
Population Expansion and Genetic Structure in Carcharhinus brevipinna in the Southern Indo-Pacific. PLoS ONE, 8(9), Article e75169
DOI: 10.1371/journal.pone.0075169

Dudgeon, C.L. & Blower, D.C. & Broderick, D. & Giles, J.L. & Holmes, B.J. & Kashiwagi, T. & Krück, N.C. & Morgan, J.A.T. & Tillett, B.J. & Ovenden, J.R. (2012)
Corrigendum to "A review of the application of molecular genetics for fisheries management and conservation of sharks and rays. (vol 80, pg 1789, 2012)" Journal of Fish Biology, 80(7), 2649
DOI: 10.1111/j.1095-8649.2012.03364.x

Kashiwagi, T. & Broderick, D. & Lance, S.L. & Bennett, M.B. & Ovenden, J.R. (2012)
Development and characterization of ten microsatellite loci for the reef manta ray Manta alfredi. Conservation Genetics Resources, 4(4), 1055–1058
DOI: 10.1007/s12686-012-9705-7

Morgan, J.A.T. & Harry, A.V. & Welch, D.J. & Street, R. & White, J. & Geraghty, P.T. & Macbeth, W.G. & Tobin, A. & Simpfendorfer, C.A. & Ovenden, J.R. (2012)
Detection of interspecies hybridisation in Chondrichthyes: hybrids and hybrid offspring between Australian (Carcharhinus tilstoni) and common (C. limbatus) blacktip shark found in an Australian fishery. Conservation Genetics, 13(2), 455–463
DOI: 10.1007/s10592-011-0298-6

Dudgeon, C.L. & Blower, D.C. & Broderick, D. & Giles, J.L. & Holmes, B.J. & Kashiwagi, T. & Krück, N.C. & Morgan, J.A.T. & Tillett, B.J. & Ovenden, J.R. (2012)
A review of the application of molecular genetics for fisheries management and conservation of sharks and rays. Journal of Fish Biology, 80(5), 1789–1843
DOI: 10.1111/j.1095-8649.2012.03265.x

Kashiwagi, T. & Marshall, A.D. & Bennett, M.B. & Ovenden, J.R. (2012)
The genetic signature of recent speciation in manta rays (Manta alfredi and M. birostris). Molecular Phylogenetics and Evolution, 64(1), 212–218
DOI: 10.1016/j.ympev.2012.03.020

Tillett, B.J. & Meekan, M.G. & Field, I.C. & Thorburn, D.C. & Ovenden, J.R. (2012)
Evidence for reproductive philopatry in the bull shark Carcharhinus leucas. Journal of Fish Biology, 80(6), 2140–2158
DOI: 10.1111/j.1095-8649.2012.03228.x

Blower, D.C. & Pandolfi, J.M. & Bruce, B.D. & Gomez-Cabrera, M.D.C. & Ovenden, J.R. (2012)
Population genetics of Australian white sharks reveals fine-scale spatial structure, transoceanic dispersal events and low effective population sizes. Marine Ecology Progress Series, 455, 229–244
DOI: 10.3354/meps09659

Tillett, B.J. & Meekan, M.G. & Broderick, D. & Field, I.C. & Cliff, G. & Ovenden, J.R. (2012)
Pleistocene isolation, secondary introgression and restricted contemporary gene flow in the pig-eye shark, Carcharhinus amboinensis across northern Australia. Conservation Genetics, 13(1), 99–115
DOI: 10.1007/s10592-011-0268-z

Harry, A.V. & Morgan, J.A.T. & Ovenden, J.R. & Tobin, A.J. & Welch, D.J. & Simpfendorfer, C.A. (2012)
Comparison of the reproductive ecology of two sympatric blacktip sharks (Carcharhinus limbatus and Carcharhinus tilstoni) off north-eastern Australia with species identification inferred from vertebral counts. Journal of Fish Biology, 81(4), 1225–1233
DOI: 10.1111/j.1095-8649.2012.03400.x

Tillett, B.J. & Field, I.C. & Bradshaw, C.J.A. & Johnson, G. & Buckworth, R.C. & Meekan, M.G. & Ovenden, J.R. (2012)
Accuracy of species identification by fisheries observers in a north Australian shark fishery. Fisheries Research, 127–128, 109–115
DOI: 10.1016/j.fishres.2012.04.007

Kashiwagi, T. & Marshall, A.D. & Bennett, M.B. & Ovenden, J.R. (2011)
Habitat segregation and mosaic sympatry of the two species of manta ray in the Indian and Pacific Oceans: Manta alfredi and M. birostris. Marine Biodiversity Records, 4, Article e53
DOI: 10.1017/S1755267211000479

Kashiwagi, T. & Marshall, A.D. & Bennett, M.B. & Ovenden, J.R. (2011)
Habitat segregation and mosaic sympatry of the two species of manta ray in the Indian and Pacific Oceans: Manta alfredi and M. birostris. - CORRIGENDUM Marine Biodiversity Records, 4, Article e86
DOI: 10.1017/S1755267211000881

Ovenden, J.R. & Morgan, J.A.T. & Street, R. & Tobin, A. & Simpfendorfer, C.A. & Macbeth, W. & Welch, D. (2011)
Negligible evidence for regional genetic population structure for two shark species Rhizoprionodon acutus (Rüppell, 1837) and Sphyrna lewini (Griffith & Smith, 1834) with contrasting biology. Marine Biology, 158(7), 1497–1509
DOI: 10.1007/s00227-011-1666-y

Blower, D.C. & Pandolfi, J.M. & Bruce, B.D. & Gomez-Cabrera, C.M. & Ovenden, J.R. (2011)
Australian white shark population genetics reveals fine scale population structure, transoceanic dispersal events and low effective population sizes [Abstract]. In Program and Abstracts for the 2011 Workshop and Conference of the Oceania Chondrichthyan Society, 13th–15th September 2011, Sea World Resort and Water Park, Gold Coast, Queensland, Australia.

Kashiwagi, T. & Marshall, A.D. & Bennett, M.B. & Ovenden, J.R. (2011)
The genetic signature of recent speciation in manta rays [Abstract]. In Program and Abstracts for the 2011 Workshop and Conference of the Oceania Chondrichthyan Society, 13th–15th September 2011, Sea World Resort and Water Park, Gold Coast, Queensland, Australia.

Holmes, B.J. & Pepperell, J.G. & Griffiths, S.P. & Bennett, M.B. & Ovenden, J.R. & Neil, D.T. & Tibbetts, I.R. (2011)
Tiger shark (Galeocerdo cuvier) habitat use and movement patterns in south eastern Australian waters [Abstract]. In Program and Abstracts for the 2011 Workshop and Conference of the Oceania Chondrichthyan Society, 13th–15th September 2011, Sea World Resort and Water Park, Gold Coast, Queensland, Australia.

Morgan, J.A.T. & Welch, D.J. & Harry, A.V. & Street, R. & Broderick, D. & Ovenden, J.R. (2011)
A mitochondrial species identification assay for Australian blacktip sharks (Carcharhinus tilstoni, C. limbatus and C. amblyrhynchoides) using real-time PCR and high-resolution melt analysis. Molecular Ecology Resources, 11(5), 813–819
DOI: 10.1111/j.1755-0998.2011.03023.x

Ovenden, J.R. & Morgan, J.A.T. & Kashiwagi, T. & Broderick, D. & Salini, J. (2010)
Towards better management of Australia's shark fishery: genetic analyses reveal unexpected ratios of cryptic blacktip species Carcharhinus tilstoni and C. limbatus. Marine and Freshwater Research, 61(2), 253–262
DOI: 10.1071/MF09151

Schluessel, V. & Broderick, D. & Collin, S.P. & Ovenden, J.R. (2010)
Evidence for extensive population structure in the white-spotted eagle ray within the Indo-Pacific inferred from mitochondrial gene sequences. Journal of Zoology, 281(1), 46–55
DOI: 10.1111/j.1469-7998.2009.00680.x

Dudgeon, C.L. & Broderick, D. & Ovenden, J.R. (2009)
IUCN classification zones concord with, but underestimate, the population genetic structure of the zebra shark Stegostoma fasciatum in the Indo-West Pacific. Molecular Ecology, 18(2), 248–261
DOI: 10.1111/j.1365-294X.2008.04025.x

Ovenden, J.R. & Kashiwagi, T. & Broderick, D. & Giles, J. & Salini, J. (2009)
The extent of population genetic subdivision differs among four co-distributed shark species in the Indo-Australian archipelago. BMC Evolutionary Biology, 9, Article 40
DOI: 10.1186/1471-2148-9-40

Salini, J.P. & Giles, J. & Holmes, B.H. & Last, P.R. & Marshall, L.J. & Meekan, M.G. & Ovenden, J.R. & Pillans, R.D. & Stevens, J.D. & Ward, R.D. (2007)
Species identification from shark fins - Phase 1. AFMA Report R05/0538. Cleveland, Qld.: CSIRO Marine and Atmospheric Research. 149 pp.

Salini, J.P. & McAuley, R.B. & Blaber, S.J.M. & Buckworth, R.C. & Chidlow, J.A. & Gribble, N. & Ovenden, J.R. & Peverell, S.C. & Pillans, R. & Stevens, J.D. & Stobutzki, I. & Tarca, C. & Walker, T. (2006)
Northern Australian sharks and rays: the sustainability of target and bycatch species, Phase 2. Final Report to FRDC Project No. 2002/064. 183 pp.

Dudgeon, C.L. & Feldheim, K.A. & Schick, M. & Ovenden, J.R. (2006)
Polymorphic microsatellite loci for the zebra shark Stegostoma fasciatum. Molecular Ecology Notes, 6(4), 1086–1088
DOI: 10.1111/j.1471-8286.2006.01442.x

Ovenden, J.R. & Street, R. & Broderick, D. (2006)
New microsatellite loci for Carcharhinid sharks (Carcharhinus tilstoni and C. sorrah) and their cross-amplification in other shark species. Molecular Ecology Notes, 6(2), 415–418
DOI: 10.1111/j.1471-8286.2005.01254.x