Schmidt-Roach, A.C.J. & Bruels, C.C. & Barnett, A. & Miller, A.D. & Sherman, C.D.H. & Ebert, D.A. & Schmidt-Roach, S. & da Silva, C. & Wilke, C.G. & Thorburn, C. & Mangel, J.C. & Ezcurra, J.M. & Irigoyen, A. & Jaureguizar, A.J. & Braccini, M. & Alfaro-Shigueto, J. & Duffy, C. & Shivji, M.S. (2021)
Evidence of historical isolation and genetic structuring among broadnose sevengill sharks (Notorynchus cepedianus) from the world's major oceanic regions. Reviews in Fish Biology and Fisheries, 31(2), 433–447
DOI: 10.1007/s11160-021-09651-1

Lieber, L. & Hall, G. & Hall, J. & Berrow, S. & Johnston, E. & Gubili, C. & Sarginson, J. & Francis, M. & Duffy, C. & Wintner, S.P. & Doherty, P.D. & Godley, B.J. & Hawkes, L.A. & Witt, M.J. & Henderson, S.M. & Desabata, E. & Shivji, M.S. & Dawson, D.A. & Sims, D.W. & Jones, C.S. & Noble, L.R. (2020)
Spatio-temporal genetic tagging of a cosmopolitan planktivorous shark provides insight to gene flow, temporal variation and site-specific re-encounters. Scientific Reports, 10, Article 1661
DOI: 10.1038/s41598-020-58086-4

Junge, C. & Donnellan, S.C. & Huveneers, C. & Bradshaw, C.J.A. & Simon, A. & Drew, M. & Duffy, C. & Johnson, G. & Cliff, G. & Braccini, M. & Cutmore, S.C. & Butcher, P. & McAuley, R. & Peddemors, V. & Rogers, P. & Gillanders, B.M. (2019)
Comparative population genomics confirms little population structure in two commercially targeted carcharhinid sharks. Marine Biology, 166(2), Article 16
DOI: 10.1007/s00227-018-3454-4

Duffy, C. & Francis, M. & Dunn, M. & Finucci, B. & Ford, R. & Hitchmough, R. & Rolfe, J. (2018)
Conservation status of New Zealand chondrichthyans (chimaeras, sharks and rays), 2016. New Zealand Department of Conservation

Veríissimo, A. & Zaera-Perez, D. & Leslie, R. & Igléesias, S.P. & Séeret, B. & Grigoriou, P. & Sterioti, A. & Gubili, C. & Barríia, C. & Duffy, C. & Hernáandez, S. & Batjakas, I.E. & Griffiths, A.M. (2017)
Molecular diversity and distribution of eastern Atlantic and Mediterranean dogfishes Squalus highlight taxonomic issues in the genus. Zoologica Scripta, 46(4), 414–428
DOI: 10.1111/zsc.12224

Corrigan, S. & Delser, P.M. & Eddy, C. & Duffy, C. & Yang, L. & Li, C. & Bazinet, A.L. & Mona, S. & Naylor, G.J.P. (2017)
Historical introgression drives pervasive mitochondrial admixture between two species of pelagic sharks. Molecular Phylogenetics and Evolution, 110, 122–126
DOI: 10.1016/j.ympev.2017.03.011

Duffy, C. (2016)
Species descriptions: Squalus cubensis In Database of modern sharks, rays and chimaeras, www.shark–references.com, World Wide Web electronic publication, Version 09/2016

Duffy, C. (2016)
Misidentification of Carcharhinus galapagensis (Snodgrass & Heller, 1905) in the Southwest Pacific Ocean. Zootaxa, 4132(1), 97–106
DOI: 10.11646/zootaxa.4132.1.8

Duffy, C. & Vogiatzis, A. (2016)
First record of the sicklefin devilray Mobula tarapacana (Myliobatiformes: Mobulidae) from Australian waters. Zootaxa, 4126(1), 141–145
DOI: 10.11646/zootaxa.4126.1.9

Francis, M.P. & Duffy, C. & Lyon, W.S. (2015)
Spatial and temporal habitat use by white sharks (Carcharodon carcharias) at an aggregation site in southern New Zealand. Marine and Freshwater Research, 66(10), 900–918
DOI: 10.1071/MF14186

Trnski, T. & Duffy, C. & Francis, M.P. & McGrouther, M.A. & Stewart, A.L. & Struthers, C.D. & Zintzen, V. (2015)
Recent collections of fishes at the Kermadec Islands and new records for the region. Bulletin of the Auckland Museum, 20, 463–480

Hernández, S. & Duffy, C. & Francis, M.P. & Ritchie, P.A. (2014)
Evidence for multiple paternity in the school shark Galeorhinus galeus found in New Zealand waters. Journal of Fish Biology, 85(5), 1739–1745
DOI: 10.1111/jfb.12490

Corrigan, S. & Eddy, C. & Duffy, C. & Naylor, G.J.P. (2014)
Are Dusky and Galapagos sharks conspecific? A thousand genes indicate genetic homogeneity in spite of morphological disparity [Abstract]. In Programm and Abstracts of Shark International, Durban 2014: 40

Francis, M.P. & Duffy, C. & Lyon, W.S. (2014)
White shark, Carcharodon carcharias, spatial and temporal habitat use at an aggregation site in southern New Zealand [Abstract]. In Programm and Abstracts of Shark International, Durban 2014: 69

Gubili, C. & Duffy, C. & Cliff, G. & Wintner, S.P. & Shivji, M. & Chapman, D. & Bruce, B.D. & Martin, A.P. & Sims, D.W. & Jones, C.S. & Noble, L.R. (2012)
Chapter 24: Application of Molecular Genetics for Conservation of the White Shark, Carcharodon carcharias, L. 1758. In M.L. Domeier (Ed.), Global Perspectives on the Biology and Life History of the White Shark (pp. 357–380). CRC Press

Francis, M.P. & Duffy, C. & Bonfil, R. & Manning, M.J. (2012)
Chapter 22: The third dimension. Vertical habitat use by white sharks, Carcharodon carcharias, in New Zealand and in oceanic and tropical waters of the southwest Pacific Ocean. In M.L. Domeier (Ed.), Global Perspectives on the Biology and Life History of the White Shark (pp. 319–342). CRC Press

Duffy, C. & Francis, M.P. & Manning, M.J. & Bonfil, R. (2012)
Chapter 21: Regional population connectivity, oceanic habitat, and return migration revealed by satellite tagging of white sharks, Carcharodon carcharias, at New Zealand aggregation sites. In M.L. Domeier (Ed.), Global Perspectives on the Biology and Life History of the White Shark (pp. 301–318). CRC Press

Benavides, M.T. & Feldheim, K.A. & Duffy, C. & Wintner, S. & Braccini, M. & Boomer, J. & Huveneers, C. & Rogers, P.J. & Mangel, J.C. & Alfaro-Shigueto, J. & Cartamil, D.P. & Chapman, D.D. (2011)
Phylogeography of the copper shark (Carcharhinus brachyurus) in the southern hemisphere: implications for the conservation of a coastal apex predator. Marine and Freshwater Research, 62(7), 861–869
DOI: 10.1071/MF10236

Duffy, C. & Seeto, J. & Trnski, T. (2011)
Review of records of sawfishes (Chondrichthyes: Pristidae) from Fiji, with deletion of Pristis zijsron Bleeker, 1851 and Pristis sp. from the fauna. Zootaxa, 3115, 65–67

Duffy, C. (2011)
Squalus griffini IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. (2011)
Squalus raoulensis IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Tirard, P. & Manning, M.J. & Jollit, I. & Duffy, C. & Borsa, P. (2010)
Records of Great White Sharks (Carcharodon carcharias) in New Caledonian Waters. Pacific Science, 64(4), 567–576
DOI: 10.2984/64.4.567

Bonfil, R. & Francis, M.P. & Duffy, C. & Manning, M.J. & O'Brien, S. (2010)
Large-scale tropical movements and diving behavior of white sharks Carcharodon carcharias tagged off New Zealand. Aquatic Biology, 8, 115–123
DOI: 10.3354/ab00217

Bonfil, R. & Francis, M.P. & Duffy, C. & Manning, M. & O'Brien, S. & Scolley, K. (2009)
White sharks (Carcharodon carcharias) from New Zealand like to vacation in the tropics [Abstract]. In Progrtamm and Abstracts, 13th EEA Conference 2009, Palma de Mallorca, Spain(ed.Morey, G. & Yuste, L. and Pons, G.X.): 60

Duffy, C. & Last, P.R. (2007)
Part 9 - Redescription of the Northern Spiny Dogfish Squalus griffini Phillips 1931 from New Zealand. CSIRO Marine and Atmospheric Research Paper, 14, 91–100

Duffy, C. & Last, P.R. (2007)
Part 4 - Squalus raoulensis sp. nov., a new spurdog of the megalops-cubensis group from the Kermadec Ridge. CSIRO Marine and Atmospheric Research Paper, 14, 31–38.

Duffy, C. (2007)
First record of Centrophorus harrissoni from New Zealand, with observations on squamation in Centrophoridae (Squaliformes). New Zealand Journal of Marine and Freshwater Research, 41, 163–173

Duffy, C. & Huveneers, C. (2007)
Apristurus laurussonii IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Beveridge, I. & Duffy, C. (2006)
Erratum: Redescription of Cetorhinicola acanthocapax Beveridge & Campbell, 1988 (Cestoda : Trypanorhyncha) from the basking shark Cetorhinus maximus (Gunnerus) (vol 62, pg 191, 2005). Systematic Parasitology, 65(1), 93–95
DOI: 10.1007/s11230-006-9045-7

Bishop, S.D.H. & Francis, M.P. & Duffy, C. & Montgomery, J.C. (2005)
Age, growth, maturity, longevity and natural mortality of the shortfin mako shark (Isurus oxyrinchus) in New Zealand waters. Marine and Freshwater Research, 57(2), 143–154
DOI: 10.1071/MF05077

Beveridge, I. & Duffy, C. (2005)
Redescription of Cetorhinicola acanthocapax Beveridge & Campbell, 1988 (Cestoda: Trypanorhyncha) from the basking shark Cetorhinus maximus (Gunnerus). Systematic Parasitology, 62(3), 191–198
DOI: 10.1007/s11230-005-5492-9

Francis, M.P. & Duffy, C. (2005)
Length at maturity in three pelagic sharks (Lamna nasus, Isurus oxyrinchus, and Prionace glauca) from New Zealand. Fishery Bulletin, 103(3), 489–500

Duffy, C. (2004)
International trade in white shark Carcharodon carcharias products from New Zealand. Shark News, Newsletter of the IUCN Shark Specialist Group, 16, 1–3

Duffy, C. & Huveneers, C. (2004)
Apristurus aphyodes IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Huveneers, C. & Duffy, C. (2004)
Apristurus brunneus IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. & Huveneers, C. (2004)
Apristurus fedorovi IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. & Huveneers, C. (2004)
Apristurus gibbosus IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. & Huveneers, C. (2004)
Apristurus herklotsi IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. & Huveneers, C. (2004)
Apristurus internatus IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Huveneers, C. & Duffy, C. (2004)
Apristurus investigatoris IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. & Huveneers, C. (2004)
Apristurus kampae IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. & Huveneers, C. (2004)
Apristurus longicephalus IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Huveneers, C. & Duffy, C. (2004)
Apristurus macrorhynchus IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Huveneers, C. & Duffy, C. (2004)
Apristurus macrostomus IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. & Huveneers, C. (2004)
Apristurus micropterygeus IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Huveneers, C. & Duffy, C. & Acuña, E. (2004)
Apristurus nasutus IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Huveneers, C. & Duffy, C. (2004)
Apristurus parvipinnis IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Huveneers, C. & Duffy, C. (2004)
Apristurus pinguis IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. & Huveneers, C. (2004)
Apristurus platyrhynchus IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Huveneers, C. & Duffy, C. (2004)
Apristurus profundorum IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Huveneers, C. & Duffy, C. (2004)
Apristurus sinensis IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Huveneers, C. & Duffy, C. (2004)
Apristurus spongiceps IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. & Ebert, D.A. & Stenberg, C. (2004)
Mitsukurina owstoni IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. (2004)
Centrophorus isodon IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. & Abbott, D. (2003)
Sightings of mobulid rays from northern New Zealand, with confirmation of the occurrence of Manta birostris in New Zealand waters. New Zealand Journal of Marine and Freshwater Research, 37, 715–721
DOI: 10.1080/00288330.2003.9517201

Duffy, C. (2003)
Apristurus exsanguis IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. & Gordon, I. (2003)
Carcharhinus brachyurus IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. (2003)
Chimaera panthera IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. & Paul, L.J. (2003)
Dasyatis brevicaudata IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. (2003)
Myliobatis tenuicaudatus IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. (2003)
Scymnodalatias albicauda IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. (2003)
Scymnodalatias sherwoodi IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. (2003)
Torpedo fairchildi IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. (2003)
Typhlonarke aysoni IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Duffy, C. (2003)
Typhlonarke tarakea IUCN 2012, IUCN Red List of Threatened Species, Version 2012.2, https://www.iucnredlist.org

Francis, M.P. & Duffy, C. (2002)
Distribution, seasonal abundance and bycatch of basking sharks (Cetorhinus maximus) in New Zealand, with observations on their winter habitat. Marine Biology, 140(4), 831–842
DOI: 10.1007/s00227-001-0744-y

Duffy, C. (2002)
Distribution, seasonality, lengths, and feeding behaviour of whale sharks (Rhincodon typus) observed in New Zealand waters. New Zealand Journal of Marine and Freshwater Research, 36, 565–570

Pardini, A.T. & Jones, C.S. & Noble, L.R. & Kreiser, B. & Malcolm, H. & Bruce, B.D. & Stevens, J.D. & Cliff, G. & Scholl, M.C. & Francis, M.P. & Duffy, C. & Martin, A.P. (2001)
Sex-biased dispersal of great white sharks. Nature, 412(6843), 139–140
DOI: 10.1038/35084125

Duffy, C. & Francis, M.P. (2001)
Evidence of summer parturition in shortfin mako (Isurus oxyrinchus) sharks from New Zealand waters. New Zealand Journal of Marine and Freshwater Research, 35(2), 319–324
DOI: 10.1080/00288330.2001.9517001

Andrew, M. & Kreiser, B.R. & Reposar, A. & Pardini, A. & Jones, C. & Cliff, G. & Stevens, J. & Malcolm, H. & Bruce, B.D. & Francis, M.P. & Duffy, C. & Anderson, S. & Pyle, P. (2000)
Population genetics of the great white shark [Abstract]. American Elasmobranch Society 16th Annual Meeting, 14–20 June 2000, La Paz, Mexico

Duffy, C. (1997)
Further records of the goblin shark, Mitsukurina owstoni (Lamniformes: Mitsukurinidae), from New Zealand. New Zealand Journal of Marine and Freshwater Research, 24, 167–171