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Vaudo, J.J. & Dewar, H. & Byrne, M.E. & Wetherbee, B.M. & Shivji, M.S. (2024)
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Wagner, I. & Smolina, I. & Koop, M.E.L. & Bal, T. & Lizano, A.M. & Choo, L. & Hofreiter, M. & Gennari, E. & de Sabata, E. & Shivji, M.S. & Noble, L.R. & Jones, C.S. & Hoarau, G. (2024)
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Byrne, M.E. & Dewar, H. & Vaudo, J.J. & Wetherbee, B.M. & Shivji, M.S. (2024)
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Weideli, O.C. & Daly, R. & Peel, L.R. & Heithaus, M.R. & Shivji, M.S. & Planes, S. & Papastamatiou, Y.P. (2023)
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Mehlrose, M.R. & Bernard, A.M. & Finnegan, K.A. & Krausfeldt, L.E. & Lopez, J.V. & Shivji, M.S. (2022)
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Harned, S.P. & Bernard, A.M. & Salinas-de-Leon, P. & Mehlrose, M.R. & Suarez, J. & Robles, Y. & Bessudo, S. & Ladino, F. & Garo, A.L. & Zanella, I. & Feldheim, K.A. & Shivji, M.S. (2022)
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Marra, N.J. & Stanhope, M.J. & Jue, N.K. & Richards, V.P. & O'Brien, S.J. & Antunes, A. & Shivji, M.S. (2021)
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Sort, M. & Manuzzi, A. & Jimenez-Mena, B. & Ovenden, J.R. & Holmes, B.J. & Bernard, A.M. & Shivji, M.S. & Meldrup, D. & Bennett, M.B. & Nielsen, E.E. (2021)
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Schmidt-Roach, A.C.J. & Bruels, C.C. & Barnett, A. & Miller, A.D. & Sherman, C.D.H. & Ebert, D.A. & Schmidt-Roach, S. & da Silva, C. & Wilke, C.G. & Thorburn, C. & Mangel, J.C. & Ezcurra, J.M. & Irigoyen, A. & Jaureguizar, A.J. & Braccini, M. & Alfaro-Shigueto, J. & Duffy, C. & Shivji, M.S. (2021)
Evidence of historical isolation and genetic structuring among broadnose sevengill sharks (Notorynchus cepedianus) from the world's major oceanic regions. Reviews in Fish Biology and Fisheries, 31(2), 433–447
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Bernard, A.M. & Finnegan, K.A. & Bitar, P.P. & Stanhope, M.J. & Shivji, M.S. (2021)
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Pinhal, D. & Domingues, R.R. & Bruels, C.C. & Ferrette, B.L.S. & Gadig, O.B.F. & Shivji, M.S. & Martins, C. (2020)
Restricted connectivity and population genetic fragility in a globally endangered Hammerhead Shark. Reviews in Fish Biology and Fisheries, 30(4), 501–517
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Lieber, L. & Hall, G. & Hall, J. & Berrow, S. & Johnston, E. & Gubili, C. & Sarginson, J. & Francis, M. & Duffy, C. & Wintner, S.P. & Doherty, P.D. & Godley, B.J. & Hawkes, L.A. & Witt, M.J. & Henderson, S.M. & Desabata, E. & Shivji, M.S. & Dawson, D.A. & Sims, D.W. & Jones, C.S. & Noble, L.R. (2020)
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Logan, R.K. & Vaudo, J.J. & Sousa, L.L. & Sampson, M. & Wetherbee, B.M. & Shivji, M.S. (2020)
Seasonal Movements and Habitat Use of Juvenile Smooth Hammerhead Sharks in the Western North Atlantic Ocean and Significance for Management. Frontiers in Marine Science, 7, Article 566364
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Patel, E. & Bernard, A.M. & Mehlrose, M. & Harned, S. & Finnegan, K.A. & Fitzpatrick, C.K. & Lea, J.S. & Shivji, M.S. (2020)
The complete mitochondrial genome of a gray reef shark, Carcharhinus amblyrhynchos (Carcharhiniformes: Carcharhinidae), from the Western Indian Ocean. Mitochondrial DNA Part B, 5(3), 3516–3517
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Francis, M.P. & Shivji, M.S. & Duffy, C.A.J. & Rogers, P.J. & Byrne, M.E. & Wetherbee, B.M. & Tindale, S.C. & Lyon, W.S. & Meyers, M.M. (2019)
Oceanic nomad or coastal resident? Behavioural switching in the shortfin mako shark (Isurus oxyrinchus). Marine Biology, 166(1), Article 5
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Domingues, R.R. & Bruels, C.C. & Gadig, O.B.F. & Chapman, D.D. & Hilsdorf, A.W.S. & Shivji, M.S. (2019)
Genetic connectivity and phylogeography of the night shark (Carcharhinus signatus) in the western Atlantic Ocean: Implications for conservation management. Aquatic Conservation, Marine and Freshwater Ecosystems, 29(1), 102–114
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Marra, N.J. & Stanhope, M.J. & Jue, N.K. & Wang, M.H. & Sun, Q. & Bitar, P.P. & Richards, V.P. & Komissarov, A. & Rayko, M. & Kliver, S. & Stanhope, B.J. & Winkler, C. & O'Brien, S.J. & Antunes, A. & Jorgensen, S. & Shivji, M.S. (2019)
White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability. Proceedings of the National Academy of Sciences of the United States of America, 116(10), 4446–4455
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Gorman, J. & Marra, N. & Shivji, M.S. & Stanhope, M.J. (2019)
The complete mitochondrial genome of an Atlantic Ocean Shortfin Mako Shark, Isurus oxyrinchus. Mitochondrial DNA Part B, 4(2), 3642–3643
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Vaudo, J.J. & Wetherbee, B.M. & Harvey, G.C.M. & Harvey, J.C. & Prebble, A.J.F. & Corcoran, M.J. & Potenski, M.D. & Bruni, K.A. & Leaf, R.T. & Henningsen, A.D. & Collie, J.S. & Shivji, M.S. (2018)
Characterisation and monitoring of one of the world’s most valuable ecotourism animals, the southern stingray at Stingray City, Grand Cayman. Marine and Freshwater Research, 69(1), 144–154
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Lea, J.S.E. & Wetherbee, B.M. & Sousa, L.L. & Aming, C. & Burnie, N. & Humphries, N.E. & Queiroz, N. & Harvey, G.M. & Sims, D.W. & Shivji, M.S. (2018)
Ontogenetic partial migration is associated with environmental drivers and influences fisheries interactions in a marine predator. ICES Journal of Marine Science, 75(4), 1383–1392
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Bernard, A.M. & Richards, V.P. & Stanhope, M.J. & Shivji, M.S. (2018)
Transcriptome-Derived Microsatellites Demonstrate Strong Genetic Differentiation in Pacific White Sharks. Journal of Heredity, 109(7), 771–779
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Fitzpatrick, C.K. & Finnegan, K.A. & Osaer, F. & Narvaez, K. & Shivji, M.S. (2017)
The complete mitochondrial genome of the Critically Endangered Angelshark, Squatina squatina. Mitochondrial DNA Part B, 2(1), 212–213
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Vaudo, J.J. & Byrne, M.E. & Wetherbee, B.M. & Harvey, G.M. & Shivji, M.S. (2017)
Long-term satellite tracking reveals region-specific movements of a large pelagic predator, the shortfin mako shark, in the western North Atlantic Ocean. Journal of Applied Ecology, 54(6), 1765–1775
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Marra, N.J. & Richards, V.P. & Early, A. & Bogdanowicz, S.M. & Pavinski Bitar, P.D. & Stanhope, M.J. & Shivji, M.S. (2017)
Comparative transcriptomics of elasmobranchs and teleosts highlight important processes in adaptive immunity and regional endothermy. BMC Genomics, 18, Article 87
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Ruck, C.L. & Marra, N. & Shivji, M.S. & Stanhope, M.J. (2017)
The complete mitochondrial genome of the endangered great hammerhead shark, Sphyrna mokarran. Mitochondrial DNA Part B, 2(1), 246–248
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Howey, L.A. & Wetherbee, B.M. & Tolentino, E.R. & Shivji, M.S. (2017)
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Steinke, D. & Bernard, A.M. & Horn, R.L. & Hilton, P. & Hanner, R. & Shivji, M.S. (2017)
DNA analysis of traded shark fins and mobulid gill plates reveals a high proportion of species of conservation concern. Scientific Reports, 7, Article 9505
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Bernard, A.M. & Horn, R.L. & Chapman, D.D. & Feldheim, K.A. & Garla, R.C. & Brooks, E.J. & Gore, M.A. & Shivji, M.S. (2017)
Genetic connectivity of a coral reef ecosystem predator: the population genetic structure and evolutionary history of the Caribbean reef shark (Carcharhinus perezi). Journal of Biogeography, 44(11), 2488–2500
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Guy, D.S. & Ruck, C.L. & Lopez, J.V. & Shivji, M.S. (2017)
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Vaudo, J.J. & Wetherbee, B.M. & Wood, A.D. & Wenig, K. & Howey-Jordan, L.A. & Harvey, G.M. & Shivji, M.S. (2016)
Vertical movements of shortfin mako sharks Isurus oxyrinchus in the western North Atlantic Ocean are strongly influenced by temperature. Marine Ecology Progress Series, 547, 163–175
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Pickard, A.E. & Vaudo, J.J. & Wetherbee, B.M. & Nemeth, R.S. & Blondeau, J.B. & Kadison, E.A. & Shivji, M.S. (2016)
Comparative Use of a Caribbean Mesophotic Coral Ecosystem and Association with Fish Spawning Aggregations by Three Species of Shark. PLoS ONE, 11(5), Article e0151221
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Marra, N.J. & Wang, M. & Sun, Q. & Bitar, P.D.P. & Stanhope, M.J. & Shivji, M.S. (2016)
Mitochondrial genome of an Atlantic white shark (Carcharodon carcharias). Mitochondrial DNA Part B, 1(1), 717–719
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Bernard, A.M. & Feldheim, K.A. & Heithaus, M.R. & Wintner, S.P. & Wetherbee, B.M. & Shivji, M.S. (2016)
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Hester, J. & Atwater, K. & Bernard, A. & Francis, M.P. & Shivji, M.S. (2015)
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Jabado, R.W. & Al-Ghais, S.M. & Hamza, W. & Shivji, M.S. & Henderson, A.C. (2015)
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Jabado, R.W. & Al-Ghais, S.M. & Hamza, W. & Henderson, A.C. & Spaet, J.L.Y. & Shivji, M.S. & Hanner, R.H. (2015)
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O'Leary, S.J. & Feldheim, K.A. & Fields, A.T. & Natanson, L.J. & Wintner, S. & Hussey, N. & Shivji, M.S. & Chapman, D.D. (2015)
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Clarke, C.R. & Karl, S.A. & Horn, R.L. & Bernard, A.M. & Lea, J.S. & Hazin, F.H. & Prodöhl, P.A. & Shivji, M.S. (2015)
Global mitochondrial DNA phylogeography and population structure of the silky shark, Carcharhinus falciformis. Marine Biology, 162(5), 945–955
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Bernard, A.M. & Feldheim, K.A. & Shivji, M.S. (2015)
Isolation and characterization of polymorphic microsatellite markers from a globally distributed marine apex predator, the tiger shark (Galeocerdo cuvier). Conservation Genetics Resources, 7(2), 509–511
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Lea, J.S.E. & Wetherbee, B.M. & Queiroz, N. & Burnie, N. & Aming, C. & Sousa, L.L. & Mucientes, G.R. & Humphries, N.E. & Harvey, G.M. & Sims, D.W. & Shivji, M.S. (2015)
Repeated, long-distance migrations by a philopatric predator targeting highly contrasting ecosystems. Scientific Reports, 5, Article 11202
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Vaudo, J.J. & Wetherbee, B.M. & Harvey, G. & Nemeth, R.S. & Aming, C. & Burnie, N. & Howey-Jordan, L.A. & Shivji, M.S. (2014)
Intraspecific variation in vertical habitat use by tiger sharks (Galeocerdo cuvier) in the western North Atlantic. Ecology and Evolution, 4(10), 1768–1786
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Corcoran, M.J. & Wetherbee, B.M. & Shivji, M.S. & Potenski, M.D. & Chapman, D.D. & Harvey, G.M. (2013)
Supplemental Feeding for Ecotourism Reverses Diel Activity and Alters Movement Patterns and Spatial Distribution of the Southern Stingray, Dasyatis americana. PLoS ONE, 8(3), Article e59235
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Chapman, D.D. & Wintner, S.P. & Abercrombie, D.L. & Ashe, J. & Bernard, A.M. & Shivji, M.S. & Feldheim, K.A. (2013)
The behavioural and genetic mating system of the sand tiger shark, Carcharias taurus, an intrauterine cannibal. Biology Letters, 9(3), Article 20130003
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Richards, V.P. & Suzuki, H. & Stanhope, M.J. & Shivji, M.S. (2013)
Characterization of the heart transcriptome of the white shark (Carcharodon carcharias). BMC Genomics, 14, Article 697
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Wetherbee, B.M. & Harvey, G.M. & Burnie, N. & Aming, C. & Byrne, M. & Shivji, M.S. (2012)
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Pinhal, D. & Shivji, M.S. & Vallinoto, M. & Chapman, D.D. & Gadig, O.B.F. & Martins, C. (2012)
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Pinhal, D. & Shivji, M.S. & Nachtigall, P.G. & Chapman, D.D. & Martins, C. (2012)
A Streamlined DNA Tool for Global Identification of Heavily Exploited Coastal Shark Species (Genus Rhizoprionodon). PLoS ONE, 7(4), Article e34797
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Gray, T. & Bernard, A. & Clarke, S. & Chapman, D. & McAuley, R. & Shivji, M.S. (2012)
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Benavides, M.T. & Horn, R.L. & Feldheim, K.A. & Shivji, M.S. & Clarke, S.C. & Wintner, S. & Natanson, L. & Braccini, M. & Boomer, J.J. & Gulak, S.J.B. & Chapman, D.D. (2011)
Global phylogeography of the dusky shark Carcharhinus obscurus: implications for fisheries management and monitoring the shark fin trade. Endangered Species Research, 14(1), 13–22
DOI: 10.3354/esr00337

Shivji, M.S. (2010)
DNA Forensic Applications in Shark Management and Conservation. In Carrier, J.C. & Musick, J.A. & Heithaus, M.R. (Eds) Sharks and Their Relatives II: Biodiversity, Adaptive Physiology, and Conservation. CRC Press, Boca Raton: 593–610

Feldheim, K.A. & Chapman, D.D. & Simpfendorfer, C.A. & Richards, V.P. & Shivji, M.S. & Wiley, T.R. & Poulakis, G.R. & Carlson, J.K. & Eng, R. & Sagarese, S.R. (2010)
Genetic tools to support the conservation of the endangered smalltooth sawfish, Pristis pectinata. Conservation Genetics Resources, 2(1), 105–113
DOI: 10.1007/s12686-010-9175-8

Feldheim, K.A. & Chapman, D.D. & Sweet, D. & Fitzpatrick, S. & Prodöhl, P.A. & Shivji, M.S. & Snowden, B. (2010)
Shark virgin birth produces multiple, viable offspring. Journal of Heredity, 101(3), 374–377
DOI: 10.1093/jhered/esp129

Richards, V.P. & Henning, M. & Witzell, W. & Shivji, M.S. (2009)
Species Delineation and Evolutionary History of the Globally Distributed Spotted Eagle Ray (Aetobatus narinari). Journal of Heredity, 100(3), 273–283
DOI: 10.1093/jhered/esp005

Smith, W.D. & Bizzarro, J.J. & Richards, V.P. & Nielsen, J. & Márquez-Farías, J.F. & Shivji, M.S. (2009)
Morphometric convergence and molecular divergence: the taxonomic status and evolutionary history of Gymnura crebripunctata and Gymnura marmorata in the eastern Pacific Ocean. Journal of Fish Biology, 75(4), 761–783
DOI: 10.1111/j.1095-8649.2009.02300.x

Chapman, D.D. & Pinhal, D. & Shivji, M.S. (2009)
Tracking the fin trade: genetic stock identification in western Atlantic scalloped hammerhead sharks Sphyrna lewini. Endangered Species Research, 9(3), 221–228
DOI: 10.3354/esr00241

Wong, E.H.-K. & Shivji, M.S. & Hanner, R.H. (2009)
Identifying sharks with DNA barcodes: assessing the utility of a nucleotide diagnostic approach. Molecular Ecology Resources, 9(1), 243–256

Chapman, D.D. & Firchau, B. & Shivji, M.S. (2008)
Parthenogenesis in a large-bodied requiem shark, the blacktip Carcharhinus limbatus. Journal of Fish Biology, 73(6), 1473–1477
DOI: 10.1111/j.1095-8649.2008.02018.x

Beerkircher, L. & Cortés, E. & Shivji, M.S. (2008)
Case Study: Elasmobranch Bycatch in the Pelagic Longline Fishery off the Southeastern United States, 1992-1997. In M.D. Camhi, E.K. Pikitch, E.A. Babcock (Eds.) Sharks of the Open Ocean: Biology, Fisheries and Conservation. (pp. 242–246). Blackwell Publishing, Oxford, U.K.

Shivji, M.S. & Pank, M. & Natanson, L. & Kohler, N. & Stanhope, M. (2008)
Case Study: Rapid Species Identification of Pelagic Shark Tissues Using Genetic Approaches. In M.D. Camhi, E.K. Pikitch, E.A. Babcock (Eds.) Sharks of the Open Ocean: Biology, Fisheries and Conservation. (pp. 334–338). Blackwell Publishing, Oxford, U.K.

Sebastian, H. & Haye, P. & Shivji, M.S. (2008)
Characterization of the pelagic shark fin trade in north central Chile by genetic identification and trader surveys. Journal of Fish Biology, 73(10), 2293–2304
DOI: 10.1111/j.1095-8649.2008.02016.x

Chapman, D.D. & Shivji, M.S. & Louis, E. & Sommer, J. & Fletcher, H. & Prodöhl, P.A. (2007)
Virgin birth in a hammerhead shark. Biology Letters, 3(4), 425–427
DOI: 10.1098/rsbl.2007.0189

Chapman, D.D. & Pikitch, E.K. & Babcock, E.A. & Shivji, M.S. (2007)
Deep-diving and diel changes in vertical habitat use by Caribbean reef sharks, Carcharhinus perezi. Marine Ecology Progress Series, 344, 271–275
DOI: 10.3354/meps06941

Garla, R.C. & Chapman, D.D. & Shivji, M.S. & Wetherbee, B.M. & de Amorim, A.F. (2006)
Habitat of juvenile Caribbean reef sharks, Carcharhinus perezi, at two oceanic insular marine protected areas in the southwestern Atlantic Ocean: Fernando de Noronha Archipelago and Atol das Rocas, Brazil. Fisheries Research, 81(2–3), 236–241
DOI: 10.1016/j.fishres.2006.07.003

Hoelzel, A.R. & Shivji, M.S. & Magnussen, J. & Francis, M.P. (2006)
Low worldwide genetic diversity in the basking shark (Cetorhinus maximus). Biology Letters, 2(4), 639–642
DOI: 10.1098/rsbl.2006.0513

Clarke, S.C. & Magnussen, J.E. & Abercrombie, D.L. & Mcallister, M.K. & Shivji, M.S. (2006)
Identification of shark species composition and proportion in the Hong Kong shark fin market based on molecular genetics and trade records. Conservation Biology, 20(1), 201–211
DOI: 10.1111/j.1523-1739.2005.00247.x

Clarke, S.C. & Mcallister, M.K. & Milner-Gulland, E.J. & Kirkwood, G.P. & Michielsens, C.G.J. & Agnew, D.J. & Pikitch, E.K. & Nakano, H. & Shivji, M.S. (2006)
Global estimates of shark catches using trade records from commercial markets. Ecology Letters, 9(10), 1115–1126
DOI: 10.1111/j.1461-0248.2006.00968.x

Shivji, M.S. & Chapman, D.D. & Pikitch, E.K. & Raymond, P.W. (2005)
Genetic profiling reveals illegal international trade in fins of the great white shark, Carcharodon carcharias. Conservation Genetics, 6(6), 1035–1039
DOI: 10.1007/s10592-005-9082-9

Abercrombie, D.L. & Clarke, S.C. & Shivji, M.S. (2005)
Global-scale genetic identification of hammerhead sharks: Application to assessment of the international fin trade and law enforcement. Conservation Genetics, 6(5), 775–788
DOI: 10.1007/s10592-005-9036-2

Chapman, D.D. & Prodöhl, P.A. & Gelsleichter, J. & Shivji, M.S. (2005)
Mating systems of the bonnethead and scalloped hammerhead sharks in the southeast United States, as revealed by microsatellite DNA profiling [Abstract]. American Elasmobranch Society 21th Annual Meeting, Tampa, Florida

Henning, M.L. & Shivji, M.S. (2005)
Streamlined genetic identification of ridgeback sharks for fisheries management and conservation [Abstract]. American Elasmobranch Society 21th Annual Meeting, Tampa, Florida

Magnussen, J.E. & Shivji, M.S. (2005)
Efficient genetic identification of species and geographic origin of body parts from CITES and/or legislatively protected shark species [Abstract]. American Elasmobranch Society 21th Annual Meeting, Tampa, Florida

Richards, V.P. & Shivji, M.S. (2005)
Strong population genetic structure in the southern stingray, Dasyatis americana, revealed by mtDNA control region sequences [Abstract]. American Elasmobranch Society 21th Annual Meeting, Tampa, Florida

Pikitch, E.K. & Chapman, D.D. & Babcock, E.A. & Shivji, M.S. (2005)
Habitat use and demographic population structure of elasmobranchs at a Caribbean atoll (Glover's Reef, Belize). Marine Ecology Progress Series, 302, 187–197
DOI: 10.3354/meps302187

Chapman, D.D. & Pikitch, E.K. & Babcock, F. & Shivji, M.S. (2005)
Marine reserve design and evaluation using automated acoustic telemetry: A case-study involving coral reef-associated sharks in the mesoamerican Caribbean. Marine Technology Society Journal: 39(1): 42–55
DOI: 10.4031/002533205787521640

Chapman, D.D. & Prodöhl, P.A. & Gelsleichter, J. & Manire, C.A. & Shivji, M.S. (2004)
Predominance of genetic monogamy by females in a hammerhead shark, Sphyrna tiburo: implications for shark conservation. Molecular Ecology, 13(7), 1965–1974
DOI: 10.1111/j.1365-294X.2004.02178.x

Douady, C.J. & Dosay, M. & Shivji, M.S. & Stanhope, M.J. (2003)
Molecular phylogenetic evidence refuting the hypothesis of Batoidea (rays and skates) as derived sharks. Molecular Phylogenetics and Evolution, 26(2), 215–221
DOI: 10.1016/S1055-7903(02)00333-0

Chapman, D.D. & Corcoran, M.J. & Harvey, G.M. & Malan, S. & Shivji, M.S. (2003)
Mating behavior of southern stingrays, Dasyatis americana (Dasyatidae). Environmental Biology of Fishes, 68(2), 241–245
DOI: 10.1023/A:1027332113894

Chapman, D.D. & Abercrombie, D.L. & Douady, C.J. & Pikitch, E.K. & Stanhopen, M.J. & Shivji, M.S. (2003)
A streamlined, bi-organelle, multiplex PCR approach to species identification: Application to global conservation and trade monitoring of the great white shark, Carcharodon carcharias. Conservation Genetics, 4(4), 415–425
DOI: 10.1023/A:1024771215616

Shivji, M.S. & Clarke, S. & Pank, M. & Natanson, L. & Kohler, N. & Stanhope, M. (2002)
Genetic identification of pelagic shark body parts for conservation and trade monitoring. Conservation Biology, 16(4), 1036–1047
DOI: 10.1046/j.1523-1739.2002.01188.x

Pank, M. & Stanhope, M.J. & Natanson, L.J. & Kohler, N.E. & Shivji, M.S. (2001)
Rapid and simultaneous identification of body parts from the morphologically similar sharks Carcharhinus obscurus and Carcharhinus plumbeus (Carcharhinidae) using multiplex PCR. Marine Biotechnology, 3(3), 231–240
DOI: 10.1007/s101260000071

Chapman, D.D. & Prodohl, P. & Manire, C.A. & Shivji, M.S. (2000)
Microsatellite DNA profiling in the bonnethead shark, Sphyrna tiburo: application to mating system and population structure studies [Abstract]. American Elasmobranch Society 16th Annual Meeting, 14–20 June 2000, La Paz, Mexico

Shivji, M.S. & Stanhope, M.J. & Rogers, S.0. (1997)
Group I introns ("spintrons") are present in shark nuclear ribosomal DNA internal transcribed spacers [Abstract]. American Elasmobranch Society 13th Annual Meeting, 26 June–2 July 1997, Seattle, Washington